SPATIAL TRANSCRIPTOME ANALYSIS OF GLOMERULAR DIVERSITY OF PRIMARY NEPHROTIC SYNDROME

 

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https://storage.unitedwebnetwork.com/files/1099/352182012b56a4104b0b3d0065c27306.pdf
SPATIAL TRANSCRIPTOME ANALYSIS OF GLOMERULAR DIVERSITY OF PRIMARY NEPHROTIC SYNDROME

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Chikao
Onogi
Chikao Onogi onogi.chikao.d7@a.mail.nagoya-u.ac.jp Nagoya University Nephrology Nagoya Japan *
Yu Watanabe watanabe.yu.s9@f.mail.nagoya-u.ac.jp Nagoya University Nephrology Nagoya Japan -
Eri Koshi ito.eri.r5@f.mail.nagoya-u.ac.jp Nagoya University Nephrology Nagoya Japan -
Akihito Tanaka tanaka.akihito.y5@f.mail.nagoya-u.ac.jp Nagoya University Nephrology Nagoya Japan -
Kazuhiro Furuhashi furuhashi.kazuhiro.z0@f.mail.nagoya-u.ac.jp Nagoya University Nephrology Nagoya Japan -
Hiroshi Suzuki hisuzuki@med.nagoya-u.ac.jp Nagoya University Molecular Oncology Nagoya Japan -
Shoichi Maruyama maruyama.shoichi.y5@f.mail.nagoya-u.ac.jp Nagoya University Nephrology Nagoya Japan -
 
 
 
 
 
 
 
 

The diagnosis of primary nephrotic syndrome primarily relies on renal biopsy findings; however, discrepancies of histological classification and clinical course often necessitate repeat biopsies, particularly for distinguishing minimal change disease (MCD) from focal segmental glomerulosclerosis (FSGS). In this study, we applied spatial transcriptomics to examine gene expression differences between MCD and FSGS at submicron resolution, aiming to elucidate their distinct molecular and spatial characteristics.

Spatial gene expression profiling was performed using the Xenium platform (10x Genomics) on renal biopsy specimens from patients of renal allograft or diagnosed as MCD or FSGS at Nagoya University Hospital and affiliated institutions. In parallel, laser capture microdissection based bulk RNA sequencing of isolated glomeruli from the same biopsy samples and immunohistochemistry were conducted to validate transcriptomic findings.

Seventeen distinct glomerular cell types were identified based on spatial gene expression patterns. Differential expression gene (DEG) analysis revealed a large number of disease-associated DEGs in parietal epithelial cells (PECs), with prominent upregulation of epithelial-mesenchymal transition (EMT) related genes in FSGS. Notably, FSGS samples exhibited intratuft PECs – PECs that had migrated onto the glomerular tuft – showing stronger EMT activity confirmed by both gene expression and immunostaining. Cell-cell communication analysis suggested that intratuft PECs interact with surrounding mesangial and infiltrating myeloid cells, promoting extracellular matrix remodeling and lesion formation in FSGS. However, these findings varied substantially among individual glomeruli, revealing marked glomerular-level heterogeneity. Some glomeruli in MCD shared similar transcriptional signatures with those in FSGS, possibly explaining the histological overlap that complicates their clinical differentiation.

Integration of spatial transcriptomics with histological imaging in human renal biopsies captured disease-specific alteration in PECs localization and associated transcriptional states. Gene expression heterogeneity was evident even at the individual glomerulus level, emphasizing the importance of glomerulus-by-glomerulus transcriptomic evaluation rather than patient-level analysis in understanding glomerular disease pathogenesis.

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