miRNA profiles identification in kidney transplant recipients to characterize cancer risk molecular basis and targets

 

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miRNA profiles identification in kidney transplant recipients to characterize cancer risk molecular basis and targets

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Mariadelina
Simeoni
Mariadelina Simeoni mariadelina.simeoni@unicampania.it University of Campania Luigi Vanvitelli Translational Medical Sciences Naples Italy *
Valeria Grandinetti valeria.grandinetti@aosp.bo.it IRCCS Sant'Orsola University Hospital Nephrology, Dialysis and Kidney Transplantation Unit Boulogne Italy -
Rossella Tufano rossetufano519@gmail.com Biogem Scarl Bioinformatics Ariano Irpino Italy -
Carlo Maria Alfieri carlo.alfieri@unimi.it University of Milan Nephrology, Dialysis and Kidney Transplantation Unit Milan Italy -
Alessia Maria Cossu alessiamaria.cossu@unicampania.it University of Campania Luigi Vanvitelli Precision Medicine Naples Italy -
Michele Caraglia michele.caraglia@unicampania.it University of Campania Luigi Vanvitelli Precision Medicine Naples Italy -
Michele Ceccarelli m.ceccarelli@gmail.com University of Miami Bioinformatics and Biostatistics Shared Resource of the Sylvester Comprehensive Cancer Center Miami United States -
Giovambattista Capasso gb.capasso@gmail.com Biogem Scarl Biogem Research Coordination Ariano Irpino Italy -
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Post-transplant malignancies are one of the leading causes of morbidity, mortality and graft failure in kidney transplant recipients (KTRs). While viral infections and  immunosuppressive drugs have historically been considered primary causes, the mechanisms underlying post-transplant cancer occurrence remain incompletely understood, except in certain tumor types. Furthermore,  predictive cancer biomarkers have yet to be identified in KTRs

COMETA is a multicenter observational study across four University Italian hospitals. It included pre- and post-kidney transplant patients, with and without cancer. Exclusions: age under 18, cancer within 3 months post-transplant, prior cancer, and HCV/HBV positivity. Approved by Ethics Committees (nr 0029851/I - 2023, Univ. of Campania). Serum miRNAs were extracted, sequenced, and analyzed for differential expression via step-wise bioinformatic and statistical methods.

138 KTRs were enrolled in the study and the analysis of miRNA expression in their sera, and the comparison of data between in-study groups allowed the identification of three miRNA profiles: 1.transplant-related (TR-profile), 2.cancer-related (CR-profile), and 3.cancer-protective (CP-profile) [Fig 1A-B]. In our study, miR-210-3p in CR-profile was firstly found associated with non-melanoma skin cancer (NMSC), whose prevalence in our cohort was relevant. Our results were also successfully validated based on a comparison with TGCA cohort and by matching relevant miRNA with their known biological processes. Using different classifiers, rf classifier based on the TR-miRNAs had a better performance compared to the one based on the GLMnet model (AUC: rf 0.877, AUC GLMnet: 0.807), while the classifier based on the GLMnet model and CR-miRNAs had a better performance compared to the rf classifier (AUC rf: 0.689, AUC GLMnet: 0.781). The classifiers based on the TP-miRNAs showed similar performances (AUC rf: 0.711, AUC GLMnet: 0.701) [Fig. 2].

Our findings firstly support the identification of three key miRNA signatures related to kidney transplant, pro-oncogenic and onco-protective processes  in a multicentric KTRs population.  To our knowledge, this is a novel finding that opens to the possibility to develop tools for early diagnosis and personalized cancer treatments in KTRs. Moreover, there is no currently data available on the up regulation of miR-210-3p in NSCM, that was a main finding of COMETA study. 

Kewords